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krellor, to upliftingnews in Scientists discover first new antibiotics in over 60 years using AI

It sounds like they trained a classification model using 39,000 molecules with known reactivity to MRSA. The molecules are vectorized text representations of the structures. Once trained, they can run arbitrary molecules through the model and see which ones are predicted to have antibiotic properties, or at least MRSA reactivity.

They likely fed in molecules from families of structures that seem likely to contain an antibiotic but are too numerous to manually test them all. They get a prediction of which ones are likely to have the properties they want, and then start the slow process of creating and testing the molecules in the lab.

krellor, to upliftingnews in Scientists discover first new antibiotics in over 60 years using AI

It doesn't sound like it but they don't have enough detail in the article to say.

It sounds likey they are using a classification model that takes a vectorized text representation of molecules and classifies or scores them by their expected properties/reactivity. They took 39,000 molecules with known reactivity to MRSA to train the model, I assume to classify the structures. Once trained they can feed in arbitrary molecules into the trained model and see which ones are predicted to have antibiotic properties, which they can verify with bench work.

They likely fed in molecules from classes of likely candidate structures, and the model helped focus and direct the wet work.

I'm not up on the latest, but years ago I helped a similar project using FPGAs running statistical models to direct lab work.

krellor, to asklemmy in Is it just my circle, or has it been a challenge getting into the Christmas/holiday spirit the last couple of years?

I guess "getting into Christmas" probably means something different to everyone. For me it's about reliving good memories of friends and family. Some of my favorite memories are decorating cookies with my kids, mixing batches fudge, sipping eggnog and coffee over pie and ice cream, or dancing with my kids to Christmas music.

So for Christmas I play Christmas music, setup a tree, make cookies and fudge, and send the treats and little mementos to friends and family around the country. This year I sent Christmas muffins, fudge, drawings my daughter made, little $1 bottles of peppermint schnapps with Cocoa packets, and other things like Santa socks that I divied up from a cheap multipack. That was the presents I sent out to all our friends and family.

But if I didn't have those memories or enjoy baking, I doubt I would do much for it. So I suppose, ask yourself what getting into Christmas means to you, or take the time to define what you want it to mean to you, and then do the thing. If it's taking a little bit of extra time to show family you are thinking of them, then a little home assembled Cocoa kit and a card might do it. You don't need to go crazy with decorations or buying presents to get into Christmas, unless that is what you want it to mean to you.

krellor, to asklemmy in What system or method do you use for your monthly budget or personal finance?

I have an Excel workbook with three worksheets. One worksheet calculates my paydays out over the next few years, and using Excel formulas a table of paydays per month is calculated. I get paid every two weeks, so some months are 3 pay checks and the rest are 2. If you get paid a fixed amount per month it's easier.

The next sheet has tables for annual, monthly, and weekly expenses. The annual table has a column for month of the year. If I have a quarterly payment, I add it to the annual table four times, each with the correct month.

The final worksheet is a basic revenue less expenses table, one for each calendar year. It lists my income per month for each month, and then lists my monthly expenses, my annual expenses that hit that month, and weekly expenses calculated to reflect the partial weeks. All using formulas do it is easy to extend out to future years.

The worksheet also calculated how much I have left over, and what my savings target is (80% of unbudgeted funds). It's important for the actual costs of each month to be accurate, because averages hide real world things, like in November I have a large amount of renewals including my annual car insurance payment. I will always spend more than I make in November, and knowing that means I'm not panicking with unexpected expenses.

What I've found is that there is an art to budgeting. For example, I budget $100/month for discretionary purchases, plus $20/week to take my kids out for cocoa. You want to be specific enough in the budget that you have fairly few purchases not directly accounted for, with a little bit of latitude that it doesn't become a grind to track purchases.

Over the course of the month any purchase that exceeds the budgeted amount or that doesn't fit a budget category gets tracked on a separate sheet so I can see if I need to rebudget or if there was just a one time thing. Generally speaking, if it is too much work to track your individual purchases, you might be making too many small or impulse purchases that add up.

I also use Excel for my shopping lists to stay focused when I go to the store, and the mobile app easily lets me strike through items as I get them.

krellor, to lemmyshitpost in Duo out here teaching me the essentials

I've been using Duolingo to learn Spanish, and there are a lot of things I dislike about it. However, credit where credit is due, I don't have a huge drive to learn but rather I'm opportunistically learning as I have time for self improvements sake. And for that, Duo does an ok job of feeding me new lessons and slowly expanding my knowledge of the language in a few minutes a day, and it's free. After about three months I can go to a Mexican cafe, get a table, ask about the servers day, and chit chat about my kids, all in Spanish.

Which, if I'm being honest with myself, is more than I would have gotten self studying.

krellor, to asklemmy in What phone do you sugest for your grandparents?

My advice is a little different than others. I recently got my in-laws outfitted with smartphones and a new nuc. My father in-law has Parkinson's, slow onset, but it means he is clumsy. It's not likely that his phone will survive shaky hands for 8 years. What I did was buy refurbished OnePlus phones, install a simple launcher, install Bitdefender, and then add a lock app that let's me add a pin to the system settings app and the play store.

They can't install anything out change things. They can browse, play games I preload, take pictures, etc, but I don't have to worry about them installing things they shouldn't. If one of the phone dies I'll just get the latest affordable refurbished of the same line and configure it the same way.

I had originally tried without locking the phone down as much but my father in law could not stop installing spammy weather apps and clicking ads on games and following there instructions.

I also created new Google accounts for them that I manage, so they can't get stuff stolen with bad account management practice.

If you are in the US, I've also found mint to be a good deal for cell service.

krellor, to programmer_humor in 10 months later bill revisits his spaghetti code. forgets absolutely everything and refuses to elaborate. this wouldn't have happened if Bill forgot to comment on his code

When writing basic business code, structuring the code well and having good naming standards means you shouldn't need a ton of comments, but you should still have some. Plus, using structured function content blocks gives you intellisense in some languages and IDEs, which is important for code reuse in teams.

However, when I was doing scientific programming I'd have comments for almost every line at times where I put the mathematical formula and operations the line represents. Implementing a convolution neutral network with parameters to dynamically scale the layers or MPI stochastic simulations is much different than writing CRUD functions or basic business logic.

krellor, to lemmyshitpost in hmm rock

Everyone is different, and life is path dependent. Some people don't struggle with difficult memories, and others have simply not lived an unpleasant enough life to have accrued the emotional scars.

However, being blatantly brusque in your description of others followed by "sorry if I offended" is the epitome of ringing hollow. At least be honest; you don't care if you offended others.

krellor, (edited ) to lemmyshitpost in hmm rock

Not all thoughts are consciously summoned, wanted, or pleasant. The term intrusive thoughts is a good way to describe those thoughts we find unpleasant. Yes, they are natural and normal, and often how we grapple with and process experiences, but that doesn't make them unobtrusive.

Additionally, many people have intrusive recollections of upsetting events from the past. Intrusive thoughts is a good descriptor that helps avoid over using terms like flashbacks or PTSD.

Clarifying such things as intrusive helps destigmatize these thoughts for people who have them and feel the weight of social expectations, like new parents as in the comic. Feeling guilty about having these thoughts isn't healthy, and properly describing them as unwanted helps people process them. I don't see what is particularly objectionable or hard to understand about the term and why being more specific in the description of one thoughts is off-putting to you.

krellor, to asklemmy in What is the deal with Palestine and Hamas?

You're welcome, glad it was helpful!

krellor, to asklemmy in What is the deal with Palestine and Hamas?

Thank you! I wanted to touch on some additional points like those, but I am in my phone and already was hitting the character limit, so I'm glad you mentioned them.

Enjoy your weekend!

krellor, to asklemmy in What is the deal with Palestine and Hamas?

I hate to wade in but I see a lot of misinformation being posted.

The reality is both Israel and Palestinians are victims; victims of each other, their neighbors, and the world around them. You can make one side look better or worse depending on when you start the clock on the discussion.

When Israel was formed in 1948 there wasn't a Palestinian state, but rather a collection of towns with various ethnic populations including Jewish and Muslims peoples. The area was controlled by Britain in the time before WW2 under a mandate from the league of nations, the precursor to the UN.

In 1948 the UN set a border for Jewish and Palestinian states in the territory that is today known as Israel, Gaza, and the West Bank. The Jewish peoples, some who could trace their ancestry in the area to biblical times, and others who settled the area as either a Zionist effort or fleeing the Holocaust, accepted the borders which were much smaller than today's Israel, because it meant they would finally have their own state and land.

The Arabs didn't accept the border for a variety of reasons, and the armies of Egypt, Jordan, Syria, Lebanon, and Saudi Arabia attacked the fledgling Jewish state.

Notably, the Palestinians didn't attack. Though there were tensions between the Jewish peoples and the Palestinians who felt the encroachment of Jewish settlers from Europe, the Palestinian cause was really created and coopted by their Muslim neighbors.

During the war Israel expanded their borders, 700,000 Palestinians were displaced while some were massacred. Some Palestinians fled the war, some were forced out, some left at the call of their Arab neighbors, and some left in fear of being massacred. The armistice that ended the war left Israel larger, Jordan in control of the West Bank, and Egypt in control of Gaza. Note, this was before the West began to provide military aid to Israel.

So the Israel narrative or myth is that they have the pure moral high ground where they win a war for the right to exist. The Palestinian narrative and myth is that they were all violently dispossessed by the Jews and are pure victims. To this day, children born in Palestinian refuge camps are taught about the village they are "from" which often doesn't exist and their family does 70 years ago. Though many were not forced out during the war, the narrative is they were all forced to leave by the Jewish army.

So you have these competing ideas passed down on both sides that are in conflict, and neither one quite right.

When you look at how Palestinians have been treated by their Arab neighbors you see how they have been abused further. For example, Jordan and Egypt could have made the West Bank and Gaza independent Palestinian states, but they didn't. They continued to occupy them, and ultimately lose control after going to war with Israel again in the six day war in 1967, which set the stage for many of the problems today.

Over the years these narratives in conflict have bred real world violence in a tit for tat escalation that spans decades. Israel continues its narrative that it is in a war for its right to exist, which is true, but also doesn't accept responsibility for worsening the situation at times over the years and human rights abuses such as the 24 documented displacements.

Palestinians continue to define themselves as a dispossessed people, teaching their children that they need to reclaim what they lost, while being used by their surrounding Arab religious state neighbors as a proxy battleground against Israel. Palestinians have refused offers to develop permanent housing for fear of would weaken their claim to being refugees, and really live in entrenched slums that they call refuge camps.

The recent events were caused by Hamas, fearing the normalization of Israel relationships and the fading of the Palestinians cause to retake lost land, attacking Israel. Then of course, you have Israels grossly disproportionate response and the horrors therein.

So really the situation is quite a mess, and made worse by people ignorant of the history rushing to support one side or the other. In reality, both sides are prisoners of their own history, and unlikely to set themselves free anytime soon.

If you want a short podcast that goes over this in more detail, I recommend "The Daily" podcast titled 1948, which was released this past November 3rd and interviews the NYT Israel correspondent from 1970.

Let me know if you have any follow up questions.

For everyone else who is blindly on one side or the other waiting to bait me into a never ending argument by selectively framing the situation: no thanks, I have a weekend to enjoy.

Have a great day!

krellor, to memes in Sorry to be the bearer of bad news but it's not happening

Not the person you asked, but I grew up in a rural blue collar area. Construction beats up your body, and even with the right PPE you are at high risk of injury from accident or simple repetitive stress injuries. The work is often exposed to the elements, on stressful timetables, with pressure to work long hours.

Some of the trades can be better, but many have the same issues I listed above. Lots of people in trades or construction feel 60 at 40 from beating their body up.

krellor, to news in "When an eight-year-old tells you that she doesn’t want to die, it’s hard not to feel helpless:" toll of Israel-Palestine crisis on children ‘beyond devastating’, UN says

Dude, no matter how you feel about the actions of Hamas and other violent groups, empathy for the children impacted by war and violence is a sign of basic humanity. Telling children to cry you a river is just sick.

krellor, to asklemmy in Fellow Lemmings, how to create Social Media that does not have mods?

I don't think there is a technological silver bullet, but technology might enable you to overcome your concerns. Reading other answers and your comments, one concern seems to be the inability to influence mods once they are in their post. That seems easy enough to address through community voting implemented and enforced by the software.

What your really need to do is sit down and game out the situations and actions you need, and that becomes the basis for your functional software spec.

The bigger issue is who runs the software and on what hardware? Implementing safeguards to keep server admins in line with the community would be much more difficult than mods.

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